- Bagram Theater Internment Facility -- run by the USA, holds captive in extrajudicial detention and some CIA ghost prisoners
- Rishad prison & Rishad 2 prison -- possible CIA black sites
- the salt pit -- a CIA black site, captives tortured there, at least one homicide
- the dark prison -- a CIA black site, captives kept in total darkness, and bombarded with deafening music, for months on end
- the black jail -- captives reported it was near the main Bagram facility in 2007, similar to the dark prison -- may be the same facility
- Do Ab prison -- formerly a Northern Alliance facility, reportedly used for the torture of ghost prisoners
- Qala-i-Jangi prison -- hundreds died in a riot there in November 2001
- Sheberghan Prison -- hundreds of captives suffocated on their way to this prison in late 2001
- Kandahar detention facility -- run by the USA, similar abuse as at Bagram, now reported to be closed
- Pul-e-Charkhi prison -- Afghan facility, built by the Soviets, the USA completed a 300 cell addition, to receive captives from Bagram and Guantanamo
- Sarapuza prison -- An Afghan facility, reportedly used by the Taliban to house political prisonsers
- Mazari Sharif prison -- A Taliban facility
- Rish Khor prison -- a prison on an Afghan military base run by Americans
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